PaGeFinder: quantitative identification of spatiotemporal pattern genes
Date
2012-06-01Author
Pan, Jian-Bo
Hu, Shi-Chang
Wang, Hao
Zou, Quan
邹权
Ji, Zhi-Liang
Collections
- 信息技术-已发表论文 [3939]
Abstract
Pattern Gene Finder (PaGeFinder) is a web-based server for on-line detection of gene expression patterns from serial transcriptomic data generated by high-throughput technologies like microarray or next-generation sequencing. Three particular parameters, the specificity measure, the dispersion measure and the contribution measure, were introduced and implemented in PaGeFinder to help quantitative and interactive identification of pattern genes like housekeeping genes, specific (selective) genes and repressed genes. Besides the on-line computation service, the PaGeFinder also provides downloadable Java programs for local detection of gene expression patterns.
Citation
BIOINFORMATICS,2012,28(11):1544-1545URI
http://dx.doi.org/10.1093/bioinformatics/bts169WOS:000304537000023
https://dspace.xmu.edu.cn/handle/2288/15392